Scaffold Ga0193699_10043524

Overview

Basic Information

• Taxon OID: 3300021363
• Scaffold ID: Ga0193699_10043524
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1718
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9134
  • Long. (^o): -106.8956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F019913	Metagenome / Metatranscriptome	227	Y
F090360	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193699_100435243	F019913	GGAG	MGMPSGDSPQKAQQFYEYLLAHHETERPVQAWYVNWYSLAWVWGFVAALSVILIWWVMQYRTTRQKEVYLVDTWSGYTSELAGPATRFFVLLTAIIVGFAVAIIVGHIVNGQIF
Ga0193699_100435244	F090360	N/A	MAAAPPFVSYATMSEAVVPSDDWPLLYASLQAHKAHVQEYPGCQRMEVYVAVDDDGSMRLHCYTTWDTPEELEVFVDRGYTFERLLADVGASGVERSLVMEKLF
Ga0193699_100435245	F000280	GGAG	MARRRIRIPARPLSGYRDVGGHGVRHTRQTVTRAWIILAFLIACYLTWTLIIYFLEPGLR