Scaffold Ga0213872_10001769

Overview

Basic Information

• Taxon OID: 3300021361
• Scaffold ID: Ga0213872_10001769
• Source Dataset Name: Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13508
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location

• Location Name: Brazil: Minas Gerais
• Coordinates
  • Lat. (^o): -19.2822
  • Long. (^o): -43.5936

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012287	Metagenome / Metatranscriptome	282	Y
F013471	Metagenome / Metatranscriptome	271	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213872_1000176912	F013471	GGA	MLALTIFCVVAVALTTALQQTVDASIMLRDESQVRLEIQNLLDETAATKLKPGKSEVQVGDGRVRYEREIRAVQAKTARGDLLPNLYEIKVQASWRSSGQDRSESAALILYQP
Ga0213872_100017698	F012287	GAG	MVELNLPSKETRNLRKLTKSEKRLSIILVVAIFAMANFYGLGYLFDLLSTSSREVSELQSQEHSNEIWLKEKDLWLNRKRWIEASQPRIRSNQVPQSELLESLTTSAKANQLEIQEQSFAESKSTPNYQSVAVRLKLGGALQNVIKWLVQIQQPELFQAITNFSLKSANEPPTVTLELEIARWYAPNP