Scaffold Ga0213858_10003636

Overview

Basic Information

• Taxon OID: 3300021356
• Scaffold ID: Ga0213858_10003636
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7277
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (96.15%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005178	Metagenome / Metatranscriptome	409	Y
F013377	Metagenome	272	N
F021206	Metagenome	220	Y
F036003	Metagenome	171	N
F058518	Metagenome	135	Y
F089518	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_1000363615	F058518	GGAG	MRYKDITVEAEDLECDEIDTIHDAIKNHILDVGIATPKTLTGFNWKLDVRMRMDNYDT
Ga0213858_1000363617	F089518	AGTAGG	MEYVIHISKKGGECFAYHSTKDKSELDRLVGKYLRMKGITIEVKKRFLS
Ga0213858_1000363619	F021206	N/A	MTVTLNQLLEMENVLATRKIPSDIEAVTNWKYFSDSKEQWLTLGEQPLHYVLRILTKKDFKAWQLDKGK
Ga0213858_1000363620	F013377	AGGA	MTKKILKHWALFYKNGERHFINAPTRTELDSAVFGGAYAPRFDSVTYYVEYERDIKDTGHNQVHEVYLK
Ga0213858_100036363	F005178	AGGA	MVWVLVWMQLFSTQSVDHYQLGTFATMEECQIELSNAAKMVTHKSETVACLEVEVNQ
Ga0213858_100036368	F036003	AGGA	MNTRMFNYKNQSVMFINCSLDHCYNTADYMIKREKNNGYWKPRLYDDYDQDHPSVESIYDWVEIKDSDADLVPITAEEVERAYNELR