Scaffold Ga0194047_10017272

Overview

Basic Information

• Taxon OID: 3300021354
• Scaffold ID: Ga0194047_10017272
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3586
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.701
  • Long. (^o): -93.727

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022835	Metagenome	212	Y
F025685	Metagenome	200	Y
F057986	Metagenome	135	Y
F069826	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194047_100172721	F022835	N/A	LLTKLNVTNDPALEEARRQVELTMLGADIESIKEDAGSRSELKSKVDDILKKFEW
Ga0194047_1001727213	F069826	AGGA	MNTGIEHLKPIPKRKGRGPSKKPSLFATSLRLPRHVLDYFSTHHPYTKQAKIREILTEYVTNQQGVSNGNP
Ga0194047_100172724	F025685	GGAGG	MKYIVDFLTLLGLVSTIIVLGFYLGYATYQPKCGMWTAAFTKECK
Ga0194047_100172725	F057986	AGGAG	MIAMIKRLLATPTPLEMAARELVQAQRAKLEAESACDYASSMVIYNDERIERLARRLNEMKEQA