Scaffold Ga0194047_10001712

Overview

Basic Information

• Taxon OID: 3300021354
• Scaffold ID: Ga0194047_10001712
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13117
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.701
  • Long. (^o): -93.727

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008860	Metagenome	326	N
F027395	Metagenome	194	N
F091222	Metagenome	107	N
F096503	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194047_1000171211	F027395	GGA	MSYNIIENTTIQFYTSQPFTSITGTVVNPDKVRFSYSVQGQTEVSYTWTNPTGDPTNTIKQGASGTGYFYANISTVGLPGTWSWQWYGYPSGGADTTATQVAAQGTVVVSASDL
Ga0194047_1000171214	F008860	GAG	MSDIKIPVPGDIVFAHSNGVAGRLIRFGEFLRWRKGSHWNHACVVSRITQDGTVYVIQADIKGVNEALLESVGEYIILDPPARVNRNKILAFSKAQLGSSYGLLSIGSIIVDIITPSWFPAMRRKNSWICSAVTGEALRYGGWLYNFPDIYTVTPAQLFDALENTP
Ga0194047_1000171216	F091222	AGGAGG	VKLIDTLTELDFVRESEGDFSNTYRATGFDLRSNVFVNESLNESQVQVCLMPHDPDDEPLWVTFSKYCSAVDNLLILWTGKDD
Ga0194047_1000171222	F096503	AGGAGG	MFKLSYRTGRKLVWGTAAIVFMYVDLTAEGGISFWATVYGLGTAVVVATFLALISK