NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194047_10000412

Scaffold Ga0194047_10000412


Overview

Basic Information
Taxon OID3300021354 Open in IMG/M
Scaffold IDGa0194047_10000412 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29145
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (85.96%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.701Long. (o)-93.727Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012096Metagenome283Y
F015062Metagenome257Y
F016247Metagenome248Y
F018653Metagenome234Y
F079519Metagenome115N
F083731Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0194047_1000041223F079519AGGMKSDKKNISQDSLENLLIVLMNCKDKDGLLLNINPANAFQDWLIDMYPESMRQHWFNLHTYVKEQEK
Ga0194047_1000041235F015062N/AMKLKTITKYKVSAIAPRLSDEDIDPIEQDDSDNFSSQVVEGWLPWDPEDIADIRRLITEKMPLKQQFIVDSFLDGLSYVDISVTEKHWRYHFSKGIEFIKKELKL
Ga0194047_1000041236F016247AGGAMSHFIVEHRYKGNYVMESITGVEDIDTSRYENLLGIWVCDSFEEMQTMEKELKEMRHARSSQSS
Ga0194047_1000041242F083731GAGGMNLRQLLKNAGISNDIIKEVEKKAKQSSAQMEQEHQEKALAMTKMMLNDALKYRREHGDNTPPSEKLRTIIMPDDK
Ga0194047_1000041248F012096GGAGGVSTWLIAAMGVVYFVVAIDQFYKGGLGTGIMFLGYAMGNVGLVMVAK
Ga0194047_100004128F018653GAGMSNYRYILIDEFGGACRKFASKVEATPYLTTGMVLQPLPRQPKANPYAVALLTLKEAPF
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Institute for Fundamental Biomedical Research
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