Scaffold Ga0194047_10000344

Overview

Basic Information

• Taxon OID: 3300021354
• Scaffold ID: Ga0194047_10000344
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31538
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (69.81%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.701
  • Long. (^o): -93.727

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007166	Metagenome / Metatranscriptome	356	Y
F017107	Metagenome	242	Y
F017287	Metagenome	241	Y
F022156	Metagenome / Metatranscriptome	215	Y
F027399	Metagenome	194	Y
F027764	Metagenome	193	Y
F029048	Metagenome / Metatranscriptome	189	Y
F035159	Metagenome	172	Y
F096673	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194047_1000034420	F017107	GGAG	MTDYSENYLRIQKLLRCYHNATLKKQYEKATLIAHDLAEETIKLEFSTYDQVRKQWLT
Ga0194047_1000034427	F096673	N/A	MSFSVYTHDGMKETQWFFSIDELINSMINNPLNRYHRNV
Ga0194047_1000034431	F007166	GGA	MGELNQLMLEMEERLEIALNNMEFGTELAQDDIDVIRAACGKPRNSRVNPLLRDVINDFGAIFGGSK
Ga0194047_1000034434	F029048	GAG	MNMLSQIKDVIGDKARISTEPFGVDEERQLIAFEVNDLAAVLQDVIRVCADCCLNTTDREAILELLN
Ga0194047_1000034436	F017287	AGGA	METYVRRVFEGEAPCDKCDQAQTCQDNEWACRAFSFYVLHGVFEDYTARMPSREMFIKIFKEDDKALKNYLKAIREKK
Ga0194047_1000034437	F027764	GGA	MNIQIEIVKEHEDGSADALVHFDAEGLGILVEAGILSILRQYIEQEKKKAKKKK
Ga0194047_1000034442	F022156	N/A	MNDLDKDVVKEAIKEWLNEKVTQFGWFSLKTIGYAFVALIGYAWISTHGFQLPK
Ga0194047_1000034443	F027399	GAGG	MNFTFTWILDKFGFQPKIETFDFPVSKAKKVAAKKTVKKATTRLKK
Ga0194047_100003445	F035159	AGGCGG	MFQTAFQVNAFQNDAFQIVITPVTPTKVGGDDAPYTREELKRLKGIQKKLRLAEEKRIAALRADQEARKQTIADLVDPKVSKHKQNKVQSNQEVSVDIPSNLANIDRYIANLVTQQQDLQNAVLIRAAKLRLEQELAILEAKRQAELDDEEALLALIL