NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194047_10000283

Scaffold Ga0194047_10000283


Overview

Basic Information
Taxon OID3300021354 Open in IMG/M
Scaffold IDGa0194047_10000283 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34738
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (70.18%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.701Long. (o)-93.727Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004517Metagenome / Metatranscriptome434Y
F007848Metagenome343Y
F011648Metagenome / Metatranscriptome288Y
F027399Metagenome194Y
F040482Metagenome / Metatranscriptome161N
F045569Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0194047_1000028319F027399AGGMNFTFTWILDKFGFQAKPAFDFKPAVKKVAKKATKVVAKKTKTTKK
Ga0194047_1000028320F045569GAGVEIDPVKFGVTWQKVENMEYEVAELRKDVKQLLELANKGRGGLWAGMMVVSAVSAFIGFISHYATGK
Ga0194047_1000028329F007848GGAMKDIIGACLLGVLFAAMFVYGIPAKAQTYPITNAQGYNVGTVQIQGNTAQFVNPMGYTTQTATIYPNQVIITTPSGYTQSVIGNTGYTTPPSPPTPMSPRVMQ
Ga0194047_1000028333F011648AGGAGMSEQEQDFQSFQQHLERIFKDLDDGVFLTADEIGDLRYACGLPSPVKPNPVLKAVFDDFSTIFRSAK
Ga0194047_1000028336F040482GGAGMTWNLRLVNMSNPYEDYFEIREVYYDTMGKPIGHSNAAIGGEDRLEVDRYIELAKLALDKPIIKFANHEDTCKDNQREP
Ga0194047_1000028349F004517AGGAMEHMNRKYKKEDAMLREHKQSTFEKNQADRIARRKMIANKLKDLDKEVK
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