Scaffold Ga0194047_10000209

Overview

Basic Information

• Taxon OID: 3300021354
• Scaffold ID: Ga0194047_10000209
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39816
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (64.38%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.701
  • Long. (^o): -93.727

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001774	Metagenome / Metatranscriptome	636	Y
F007166	Metagenome / Metatranscriptome	356	Y
F007848	Metagenome	343	Y
F016143	Metagenome	249	Y
F017107	Metagenome	242	Y
F017287	Metagenome	241	Y
F021938	Metagenome / Metatranscriptome	216	Y
F022814	Metagenome	212	Y
F035159	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194047_1000020929	F021938	AGGAG	MKCPNCGYEEGNHVAKLSDEDYFMEIWTPTLGLEEAKKSWLEKQNAPRQTTHMVISDIQGHISMADGTWISSRSKHRENLKRNHCIELGNDVPMERKAVEISKKSQEARKRQIAEIAYEKLKY
Ga0194047_1000020931	F035159	N/A	MFQTAFQPTAFQNNAFQIVITPVRPTGGDDAWTPEERKKYKALQKKLQVAENKRIEALKTDAKNRKQAIADLVNPKPVAPIQQNKVQSNQEVSVDIPSNLANIDRYIANLVRQQQDLQTAVAMREAKLRLEQEIAILEAKRQAELDDEEAILLLL
Ga0194047_1000020932	F001774	AGGAG	MALQLALESTQFGVPAPKAYARITNFFGTKDQIQVQVAIYYDEAARQGNMATVREDAHYIAVEDLKGDIIPAIYGILKTFTQYQNATDA
Ga0194047_1000020946	F022814	N/A	MPLPEEVDFVITSDLETMGTYLYDTGEDYEHCITISSARCGHFYTVLTTLAHECVHMSFHRQKGDKWMQHGKPFRTRCKMVAHELGLDGLEL
Ga0194047_100002095	F017287	GGA	MQTYISSVFEGEAPCDHCSQKTDCQEYELACRAFSYYVLHGRFHDHTVRMPTHNLFNKIFKEDDKALKNYLKSKEAE
Ga0194047_1000020950	F017107	N/A	MNDYSQNYLKLQRLMKSYHNATLKCDYELATQLAHELSEETIKLEFATYDQIRKQWLS
Ga0194047_1000020957	F007848	GGA	MKDFIGSCLLGALLGCMFAYGIPAKAQTVQLTDSRGYNMGTVQINGNTAQFVNPMGYTTQTATLYPNQVVIQNATGTTVVGTPSYTVPPSPVTLSSPRVLQ
Ga0194047_1000020960	F007166	GGA	MSELHQVMLEMEERLEEALQNMEFGTDLSQDDIDVIRAACGKPNNKRNVLLQNVFEDFGTIFGGAK
Ga0194047_1000020969	F016143	GGAG	MNDYIYTPTGTDITIRWKLQGWIPPSELPEYQAKWKYFQELPLRKLDDQAKKEYEIVLKRAKVSRIR