Scaffold Ga0206693_1035275

Overview

Basic Information

• Taxon OID: 3300021353
• Scaffold ID: Ga0206693_1035275
• Source Dataset Name: Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1020
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012639	Metagenome / Metatranscriptome	279	Y
F015413	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206693_10352752	F015413	GAGG	MESTELEKQVENILATPQFEQPAFDQSMSGTIKNIFSKEMLVSSAGTAISVQLGNIVGKYVPIGVAPTGTMAILAGVLLQKFGGSNNMLKNLSLGVIQGGIAQAMTPFTSGLIPQSFSQEVKAEKTEELNPMVKGVMW
Ga0206693_10352753	F012639	AGGAG	MSSNNSGLVLQCVATYAIAAPIATVQACTMQTSPTVAVVNELQVPLTENWIATDVYILAAAAITPTAAVNPVISMDKNRGRQLVQTPPLSSMLITSNTRPRFSPQPIGFEGGSIIRMFATSTGLNGGAVTTATFFV