NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206680_10121423

Scaffold Ga0206680_10121423


Overview

Basic Information
Taxon OID3300021352 Open in IMG/M
Scaffold IDGa0206680_10121423 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 150m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1011
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089413Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0206680_101214233F089413N/ALTFTKKSDILFAVMRVETQTHIRNQGVAIAEVRGALQILAETNLVGKENIQARLKHWEAKLTDVQNRLTEIENSEDLEWLEDKAGVDA
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