Scaffold Ga0206680_10008035

Overview

Basic Information

• Taxon OID: 3300021352
• Scaffold ID: Ga0206680_10008035
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 150m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3945
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004843	Metagenome	421	Y
F020372	Metagenome / Metatranscriptome	224	Y
F022429	Metagenome / Metatranscriptome	214	Y
F033079	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206680_1000803513	F022429	AGG	MGIGFSAIWNGPSFLERKPSALRMAARDGLARKKRDKSGKLKAREHFAKDWDKDLWD
Ga0206680_100080352	F020372	AGGAG	MPEDTQKNKIQILINGKEMPYSHQNMVAAINSFLPYLTNDDLDEFTKVFHTTKDHRRQKEYLSKLETLKHSWPYPDTIQQLEND
Ga0206680_100080354	F004843	N/A	MKWILIIAIALNFSGCARDATAEDSTAVTPAEQSLEKTTLTKDTSKEWVAIVMTWNPVNYTIDKEFSSEVNCWNYYDNGAGESKMLNSYGTQILDHQGNKPDAEYMKKHRPAHRVYPTRMYKNNGDWMVWLTCDLRSRHPEL
Ga0206680_100080356	F033079	GAG	VVIEDKSIEIAGNRLVWRHIQKENQRMILDPLGYDAIKDIDEIHSRNRRRTDDPYIRATTEKIAHHFPEIDDAERR