Scaffold Ga0213862_10017335

Overview

Basic Information

• Taxon OID: 3300021347
• Scaffold ID: Ga0213862_10017335
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2723
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007947	Metagenome / Metatranscriptome	342	Y
F026258	Metagenome / Metatranscriptome	198	Y
F028350	Metagenome / Metatranscriptome	192	Y
F035125	Metagenome / Metatranscriptome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213862_1001733510	F026258	N/A	GNKMLPDTQHNREQAFEHMYGMPKEWLDELIADWQEPLMGGLTMLAMSMLSDAQECIAIGQDNTARQYINRAKYVIKQMEK
Ga0213862_100173353	F007947	GAGG	MKLLDCNTILCLQNQMPDVGMDDLFIVGYLVVGLAIVIYLVINTLKEK
Ga0213862_100173354	F035125	AGGAG	METAKKKITVRFVVEQDFEVEVRDSDLGMGSFFAIGDVMVSSGYDQWDVLTHEGIFDNPVGDMRPVHDSHLFDANLYNLGLHSEYIQPWLFEGETDKDPYADEDDDEAA
Ga0213862_100173358	F028350	AGG	MRIKPNTVNPVARAMAQSRRRTQAVPDKTKYNRKKDKDDANKDRENEESQDK