NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213862_10003602

Scaffold Ga0213862_10003602


Overview

Basic Information
Taxon OID3300021347 Open in IMG/M
Scaffold IDGa0213862_10003602 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6340
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008384Metagenome334Y
F013231Metagenome / Metatranscriptome273Y
F016811Metagenome / Metatranscriptome244Y
F024348Metagenome / Metatranscriptome206Y
F056899Metagenome / Metatranscriptome137N
F063073Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0213862_1000360211F056899N/AMSRNTFVRASISGDYGQDLVMKYLEDKGYKVEEAPKKLFYDWDVKGVKNGRTVTIEVKYDSKAYMWAARRGTPEHPNLYIEFRSTTRDCDSGILKSKADFYFYILKTGKKDIAFVFDRVQLLQHLHMANYRVVGNSATGDDNAQGWIPPLHELLVSRYGYKATIDLTEYA
Ga0213862_1000360213F063073N/AMKLTAEEKSSMPIHSLILDRRKAFSELIRAYLRFNVPSAKKVEVMPNGSLSINDNIFKVDISDYTGVEVGFGYIFFNPSSGRLVIEKDNVRKIYKVEVDLLD
Ga0213862_1000360215F016811N/AMSNEGQMIYDVGVRLAWKKKRGNGYINMYQGTKDRPFQFVTRAKSLDHINRNAEMIAKMMSFVGATGKSVYDFHIIEEFYRKEISNSFSHKEEDYEKEFGQ
Ga0213862_100036027F008384AGTAGMPRYDKAIIEQEAIRSVQQGRITEELGKFILQRSIEVAGSAFVTDGNEELKQALIDAAVMRTCEKFLYYYIKNKSAANLIISIIYSTMTNKIVSLNHSDVYGHNIKGYLTYIEDGESVTKLKRYIKDDYLSEKL
Ga0213862_100036028F024348N/AMILEEYYEDLSDDEANLILDIYHVIDALVYNNEPVSLVRLGFELDIKPQELSDYLPTIVTILNKVEEEYAEVRQGYH
Ga0213862_100036029F013231N/AMINQKNYQTCKLIKNRIDLYLYEMSLLFANLGTDSTVEEHQDAYRREKEYIELIAELDPEKADRLRSSY

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