Scaffold Ga0213862

Basic Information
Taxon OID	3300021347 Open in IMG/M
Scaffold ID	Ga0213862_10002460 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021347 Open in IMG/M

Scaffold ID

Ga0213862_10002460 Open in IMG/M

Source Dataset Name

Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7647
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (9.09%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

7647

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (9.09%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

34.7181

Long. (^o)

-76.6707

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004461	Metagenome / Metatranscriptome	437	Y
F027314	Metagenome / Metatranscriptome	195	Y
F032817	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213862_1000246010	F004461	N/A	MSVTISNLPYGDRRPDLFIDAMVKSAAVLNRFRLIDGVKAKVNVPIFDASLTFGNDLCVFDPQSAASVAEKEMTVETYKWSFLNCKDALESSYRGLLLKQGQHNPETMDAEFKDWVFDYFAKLSAQKALELAGTELTTEMAADADVIDFDTNAAVTSANILDLMEGAYEAMSDVMLAAVYGDADRDFKPTFFLGTAAMQAYQIAIAGLYTTTPQGVIEGSIPAYYGMEVAHFASMPANEFIIAAPQNLVMLTDDYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA
Ga0213862_100024606	F032817	N/A	MAFNCSILLSDIDINCNKRVTGGIEKVILLLQKDITITFDPLDETQVTQVDTTNTVVFEHNIKDGVTSFEENKNISNGLGLVTTNIVIQTPAVDNKINLIDYMSRREDIVAIMVHNNDTVTISGWMDGLTMNYEANSGTGVSDKSHVNITLTTESGIASLVLDDKTAFSDQTIFA
Ga0213862_100024609	F027314	N/A	MACTVTLADIVYNCDDLGIGGIVELHVANKSNAIAAIGVGNYDEDTRVIATGNPAAAVSGIVSLSFNLKDGFSVFSEVKTVNADGTTTTVPTISVELPKMDAGKITALNQIAKGGAELVAFVKTAAGTYHVSGLDYGLYASTVDANSGTGRAEKNRFQLTLTGEENGLSYSIDADDFNAATA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213862_10002460

Overview

Ecosystem & Geography

Associated Families

Sequences