NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213862_10001423

Scaffold Ga0213862_10001423


Overview

Basic Information
Taxon OID3300021347 Open in IMG/M
Scaffold IDGa0213862_10001423 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10020
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006322Metagenome / Metatranscriptome376Y
F010877Metagenome / Metatranscriptome298Y
F101002Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0213862_100014232F101002N/AMADLVFRQGISNQYNGIAFIKSADNIIRATAGTIGAVQNRDVVKVVYTDVYEKAVYGVCTNQSTGEITFDENIYPVNPSSFTATVFLYNDTDVDEVSVYRIGVDVENGLYSKAYNQYESNISYSLIIPAKRNQYFGVTSTIVTSPNVAFLDLCDSKAYGVGLSDISLDTLNNRFKSSLEFNIATR
Ga0213862_100014238F006322N/AMPAKRNSFGKIVKGRGAELTDLQSEFLERIRDEGMDASSKVAKEMNYTNYYRDRRTSGTAFHKELMAIANAEMKSIEAAKGTNLSALIKIRDIALANDDMKAAMEAIKIINDMQGYKAPTKVEQTKIDITATIDLTAPDEEQDYLDIDAD
Ga0213862_100014239F010877N/AMSTKDLLIALLSGTMPKGDTKSEMFKFYNSMVGKSKYFPRSENPKTACGSCIQRVKTSIWKWYHSDETAPSFSELTFTGRLGAHNIPLYTITDASKEK
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Institute for Fundamental Biomedical Research
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