NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213862_10000257

Scaffold Ga0213862_10000257


Overview

Basic Information
Taxon OID3300021347 Open in IMG/M
Scaffold IDGa0213862_10000257 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23367
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (22.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001668Metagenome / Metatranscriptome654Y
F009856Metagenome / Metatranscriptome312Y
F024541Metagenome / Metatranscriptome205N
F036970Metagenome / Metatranscriptome169Y
F048232Metagenome148N
F091789Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0213862_1000025715F009856N/AMKYWFEVEDAQRWGLPAAAVLAHLKYWIARNTEAGEEPCMTQSIARMQGHLPFLTFDQIRRALSKLEKADAIYRKSNGFDRRHTYCLAELPQASGEIATTKRQDCHIEEAELPRVHIETNTSKRTRDNAREELEYQRPTEEEVVEYFRDIGGSDVADQLGQEFHTHYESTGWIVSGTPMAKWKPKARSWLSRMRNKQSNERRKGFNPTGFTPDGLKDFIANG
Ga0213862_1000025716F048232GGAMSKTVLPYQERVARIMFLREHRRNLLRDYCNDEVTKKEKHKLRLEIARVQKALKQLDPDGMFPP
Ga0213862_1000025718F036970N/AMTKYKRWVTAVNRAIVAEMAMQKKTQKDLAEALSIHPVTINRKLKDPGLFFVGELGLLCDALNIDLKNPPNYGTGAN
Ga0213862_1000025721F091789N/AMISVHPYRCKTWSEAKREWGWLMRSKGLQQINRNAPTGYGEAPDLLKGKVEGLGFVIYPHDYDPREATHTITTRSPIYGNRYCGTLNPF
Ga0213862_1000025722F024541N/AMEFFDMIISQYGSVHRCAKKLGTNREQLLRQIRTGNDQVLDAIADNCRLSRQEVRWEFRYHKENTNA
Ga0213862_1000025728F001668N/AMATVYLPVEPIEGMDSAERAEALDAEVWRLRRPLSLQSPQDITKYYYPRITHPTTGQVAIVGDTTEEVRISPEVDLTDMLALLPEVPQEEKDGLVMFIDANRGGSVPFGQLIPSTSTQLTQEEAEALGWLPDPIEP

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