 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021347 Open in IMG/M |
| Scaffold ID | Ga0213862_10000257 Open in IMG/M |
| Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23367 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (22.50%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: North Carolina | |||||||
| Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001668 | Metagenome / Metatranscriptome | 654 | Y |
| F009856 | Metagenome / Metatranscriptome | 312 | Y |
| F024541 | Metagenome / Metatranscriptome | 205 | N |
| F036970 | Metagenome / Metatranscriptome | 169 | Y |
| F048232 | Metagenome | 148 | N |
| F091789 | Metagenome / Metatranscriptome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213862_1000025715 | F009856 | N/A | MKYWFEVEDAQRWGLPAAAVLAHLKYWIARNTEAGEEPCMTQSIARMQGHLPFLTFDQIRRALSKLEKADAIYRKSNGFDRRHTYCLAELPQASGEIATTKRQDCHIEEAELPRVHIETNTSKRTRDNAREELEYQRPTEEEVVEYFRDIGGSDVADQLGQEFHTHYESTGWIVSGTPMAKWKPKARSWLSRMRNKQSNERRKGFNPTGFTPDGLKDFIANG |
| Ga0213862_1000025716 | F048232 | GGA | MSKTVLPYQERVARIMFLREHRRNLLRDYCNDEVTKKEKHKLRLEIARVQKALKQLDPDGMFPP |
| Ga0213862_1000025718 | F036970 | N/A | MTKYKRWVTAVNRAIVAEMAMQKKTQKDLAEALSIHPVTINRKLKDPGLFFVGELGLLCDALNIDLKNPPNYGTGAN |
| Ga0213862_1000025721 | F091789 | N/A | MISVHPYRCKTWSEAKREWGWLMRSKGLQQINRNAPTGYGEAPDLLKGKVEGLGFVIYPHDYDPREATHTITTRSPIYGNRYCGTLNPF |
| Ga0213862_1000025722 | F024541 | N/A | MEFFDMIISQYGSVHRCAKKLGTNREQLLRQIRTGNDQVLDAIADNCRLSRQEVRWEFRYHKENTNA |
| Ga0213862_1000025728 | F001668 | N/A | MATVYLPVEPIEGMDSAERAEALDAEVWRLRRPLSLQSPQDITKYYYPRITHPTTGQVAIVGDTTEEVRISPEVDLTDMLALLPEVPQEEKDGLVMFIDANRGGSVPFGQLIPSTSTQLTQEEAEALGWLPDPIEP |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |