Basic Information | |
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Taxon OID | 3300021347 Open in IMG/M |
Scaffold ID | Ga0213862_10000257 Open in IMG/M |
Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 23367 |
Total Scaffold Genes | 40 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (22.50%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: North Carolina | |||||||
Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001668 | Metagenome / Metatranscriptome | 654 | Y |
F009856 | Metagenome / Metatranscriptome | 312 | Y |
F024541 | Metagenome / Metatranscriptome | 205 | N |
F036970 | Metagenome / Metatranscriptome | 169 | Y |
F048232 | Metagenome | 148 | N |
F091789 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0213862_1000025715 | F009856 | N/A | MKYWFEVEDAQRWGLPAAAVLAHLKYWIARNTEAGEEPCMTQSIARMQGHLPFLTFDQIRRALSKLEKADAIYRKSNGFDRRHTYCLAELPQASGEIATTKRQDCHIEEAELPRVHIETNTSKRTRDNAREELEYQRPTEEEVVEYFRDIGGSDVADQLGQEFHTHYESTGWIVSGTPMAKWKPKARSWLSRMRNKQSNERRKGFNPTGFTPDGLKDFIANG |
Ga0213862_1000025716 | F048232 | GGA | MSKTVLPYQERVARIMFLREHRRNLLRDYCNDEVTKKEKHKLRLEIARVQKALKQLDPDGMFPP |
Ga0213862_1000025718 | F036970 | N/A | MTKYKRWVTAVNRAIVAEMAMQKKTQKDLAEALSIHPVTINRKLKDPGLFFVGELGLLCDALNIDLKNPPNYGTGAN |
Ga0213862_1000025721 | F091789 | N/A | MISVHPYRCKTWSEAKREWGWLMRSKGLQQINRNAPTGYGEAPDLLKGKVEGLGFVIYPHDYDPREATHTITTRSPIYGNRYCGTLNPF |
Ga0213862_1000025722 | F024541 | N/A | MEFFDMIISQYGSVHRCAKKLGTNREQLLRQIRTGNDQVLDAIADNCRLSRQEVRWEFRYHKENTNA |
Ga0213862_1000025728 | F001668 | N/A | MATVYLPVEPIEGMDSAERAEALDAEVWRLRRPLSLQSPQDITKYYYPRITHPTTGQVAIVGDTTEEVRISPEVDLTDMLALLPEVPQEEKDGLVMFIDANRGGSVPFGQLIPSTSTQLTQEEAEALGWLPDPIEP |
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