Scaffold Ga0213867_1018342

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1018342
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2881
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015097	Metagenome	257	Y
F034187	Metagenome / Metatranscriptome	175	N
F040631	Metagenome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_10183423	F034187	N/A	MIKLTYTNTMATLDTIEHAEIEFQLPHMANFTEACRGLAYCAGFEPESIDEYMINPHKSAYRDE
Ga0213867_10183425	F015097	N/A	MNYTYMLNMDNAKAESCDVVVKFTTDASSEFEGFTSIISEPPLYSDDLAYLEEWVMQGRNDWEPTGTFSHTNRERM
Ga0213867_10183426	F040631	N/A	SSTGASYHQHQITMNDKALTKYRQVTGACARFIERHQDKELLEDEAQTLINDNKASRSESDWQVIKDFQDECCRTVYKCTKKGLIEPATDYVPTHPTL