Scaffold Ga0213867_1004770

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213867_1004770

Scaffold Ga0213867_1004770

Overview

Basic Information
Taxon OID	3300021335 Open in IMG/M
Scaffold ID	Ga0213867_1004770 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5872
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009527	Metagenome / Metatranscriptome	316	Y
F060926	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100477011	F060926	AGG	MSWQKQVSTIAVAIAVLSGLFMALNIGIGEAVQVVVDPNDPSNPLDANTTAVFGGQVDFVDRIAVLGVFTTILGTAGLGLLRRSSNNPPFINTLITFMPVIVGLVAFTAFSTEVFEIIQGDRVWADYDDATNSYMLFLASSMVAGIVTLLKRN
Ga0213867_10047704	F009527	GAGG	MKNRFPPSIVNLILKEGQRFEVNGQFKTALGTGIIPIVASARGGKTSLAYALIDYAIEYTNRPIILDSFPQKVIDEGIPEHWKGRVSNESFNDIAKIDEPAIWLLDDSATHFNSRSAMTSTNQTLAKSAGVLSHFGGGMTVIFTTQSMSGIDLSLLRYTTISPIIRWVDKDLIPQERKEWKSEIQYGQYQLGKVCKDERFRDFFWSAKDKVLVKSNYPKFLEEEKDPLKKDLMSRPMRYHTVQEKEILLGIVKPPRKKTAKRKAE

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