Scaffold Ga0213867_1003855

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1003855
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6496
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F023748	Metagenome	209	Y
F060436	Metagenome	133	N
F062830	Metagenome	130	N
F064207	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100385513	F064207	GGAGG	MQIEKLTDKEQLIVDFLKDNNVDISEVIDVIIKANGFVGVGLVTLEEHIVEAIKKHHKYESLDKIMNG
Ga0213867_100385515	F060436	AGGAG	MRYNEMNIQHFANLVQEINVSKYTQEEYREIVEEIYMTIFRHNTDGEYVIETIPNEEGNWKVYKPTQTKEEALRLIKERNKHGGN
Ga0213867_10038554	F023748	AGGAGG	MSEYKYTYRFSEQTVDTRYYKVESNTKLTRCEMQDLAWSVEQIDGESFRCNEGTATFIGTEYGDDAQYQMEEGEEDLADD
Ga0213867_10038555	F008925	AGGAG	MKKIKPKIDTVTLTLINKLKRIDDTINEGAWEYIHLGDIIRLQDAFQEAINHYDLKKEGGIHEYGADEGKYQQFYHSDYVCHTDPKAFDPSKVEEEDDE
Ga0213867_10038556	F062830	AGGAG	MQYRIYRHPEGIGLNGKEFAVDDKKDIILFNTVNDAEKFLVKAIGKKATRVELEDNHGLHIEENTDEEN