Scaffold Ga0213867_1002591

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1002591
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7953
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019396	Metagenome	230	Y
F023291	Metagenome / Metatranscriptome	210	Y
F026261	Metagenome / Metatranscriptome	198	Y
F050195	Metagenome	145	Y
F070579	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_10025911	F023291	N/A	MNLFLNPGWKRIGISLSGGADSALLAYLILKETNADIYFTTQIRMWKTRPWQRHVAQQVVRWFKYNFPNRIEHLENFIPPEMEEPNTTFITDEYGAVKPGNRIILRAHNEWVIHNYNLDAWYAAVTKNPEDVPGGLPERDEGVLPLHMKHMGVDIVHPFVYTKKDWIIQQYYNYDILDLFDITRSCEGEFEG
Ga0213867_10025913	F019396	AGGAG	LKWKPYLKLSEEGNPCMAQQTYEPLVSEDGKTFCKNYAWPNDYQYMETKDRPLYTDEVVEWFWFNELTYLEVFKDKPYAPEVTDIDYVNRKIYLKWNEASCNQIIYSGLPWPQNVWRQQIKDIMLDIYNEGVYKLTMYPHCHYISSEGNMRAIDWYGCVPVEDPYIEEKYMQGIIHETAQFRLEETGAAVDNVLNLETMFKRSLGTHVKWGDQDMSYIYKEIFK
Ga0213867_10025915	F026261	AGAAGG	LATYLGTTDGIIDWDPIVEICKDCTTGDYNSVKSVVERSEGNWRDNPELLGRYHEIINTWDDAGYNLEEIEWWDYYPGEHFDIEIQNKFAEIVNAEPLRVFVSDVRPGTNVPYHWDVEDNEEEWLAQGELKRWVCFMDKPRWGSVLILEDKAFHNVPQGEIWEWDNYRSYHAGTSCGIHHQYLFHFLGRPK
Ga0213867_10025918	F070579	GAG	MKFYITGSTRGLGEYLAKHFKCKSFNKPLALNADIEMICNNIEAGSTVILNAHASQLEYVERLKDKCNLVVMGSIAAVNFDPEMAQYSKEKWELEKTVQQLALHNKYPMLYLQLTSSSYKDYSTVARSIQFWLDNPTVTFIGYNINE
Ga0213867_10025919	F050195	AGGA	MSEKKIVITGHTGGIGKAIYDKFTEVSCHEIIGMSRSNGYDIESDFDKVVEEAIGAEIFINNAYRDEQQLKLFHALKDKVDMMVVMGSVSRHYPELIPTDYVHDKQALAEACRLESINPNGIPILHLDLSFIEGTEINNNDPTAFKSDYNTSFEDIVDTIIFWAQKPSIRQVEFRWKLTEQVRAELERINPNVDFSRVE