NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1001232

Scaffold Ga0213867_1001232


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1001232 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11411
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (27.27%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022858Metagenome / Metatranscriptome212Y
F091975Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0213867_10012328F022858AGAAGMIDFDRIKKNLKTIIGFADSEFLELLIAILHTFLLPLAVISEIGFKWHIVFFAFFGGLFQFYSVGMRDLRCRYYSTIIATIVAILTTEEYMITGLMWEAPSRFGWLIIAFAAVINQIRVTKQWKALK
Ga0213867_10012329F091975GAGMESTEIVVAVVTILGSGAAFKFYENYIRNKRESARELREEKRSENPETMFREDLLKRINEMSASLEEAQTTILNLTQRVAELETENKFLVREIDLIKRG
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