Scaffold Ga0213867_1000233

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1000233
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25697
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (76.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030101	Metagenome / Metatranscriptome	186	Y
F050275	Metagenome / Metatranscriptome	145	N
F082265	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100023318	F030101	AGGA	MGGTKQSCTQKMDTNFLTLENSPAIVTYKKWLGTIKALVKQMTTYKTEYLIELAYAAYRVNKGYEKHTRRHSENPPTYSNKELVAYTASAHNEQSTFIPEDFTPLEVTDTDRAAVAEGKKHMRRYTMLAMGDLPQFEADLFAAYSSDEMPIGRIGILAYLPAFIERQVKDKVYKQRVKTEFADSKHLVGDKIEPSEVEILKVIPLNNDWISEPAYMHFGAIGKDLVCFTQKQMYAVGDTYDIVARIKREDLERETNTPMTRLNYVKLKKQEI
Ga0213867_100023341	F082265	N/A	MYTVEFDHDEICITVMDDTGLHGDIKVRAYDDIVYITQDDEELDVEFVLEMNPAMWEELIAAIQSPEGFFRRVKSV
Ga0213867_100023343	F050275	AGGA	MINNEDILVFDFDFDKSALLDFWNQNQDNTQPYSDRRFGRFVMNNWRILKDIELEYADTMCKHFDIDAIPKFYVLQANTILFPHTDQDTTCSINFLLSDGAAPVRFGENEYYYKTALLNTTRTHSVDKSPKDRILFKLSIKDEGFDIVKQKIINTISRS