NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1000120

Scaffold Ga0213867_1000120


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1000120 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35553
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003777Metagenome / Metatranscriptome469Y
F007086Metagenome / Metatranscriptome358Y

Sequences

Protein IDFamilyRBSSequence
Ga0213867_100012022F007086GAGGMTKRELYDIINEEIVNFKKGKINEELNESDKDLIRKIIRQEVSAIFFDLFKRRKTWGA
Ga0213867_100012039F003777GGAMSKKKPNVITPFNDKQRFKDLVNEVISDTRIFTHIPDSISLSGVLFTLTLSNKKFVFEDIKVDSSSDYVDVFLQGIKKDADSYSVTDNGTNIVINFTESIAMAPELIVNTDFSVKGKIVS

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