Scaffold Ga0210301_1176349

Overview

Basic Information

• Taxon OID: 3300021325
• Scaffold ID: Ga0210301_1176349
• Source Dataset Name: Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1033 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 624
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.216
  • Long. (^o): -123.951
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029747	Metagenome / Metatranscriptome	187	Y
F039047	Metagenome / Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210301_11763491	F039047	N/A	MKMKIEVDINDLVALKVALGNSARRIDELMNDKPDWRNLYEFDKNSVEKAQKVLAKMIAN
Ga0210301_11763492	F029747	AGG	MKYKLMIDTDTCTSFSTYPHTREGLNKALDRVDSERSRDGFKSANIVSDRDGEVFAIDMSLAIN