Scaffold Ga0210306_1167519

Overview

Basic Information

• Taxon OID: 3300021312
• Scaffold ID: Ga0210306_1167519
• Source Dataset Name: Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1072 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 707
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.232
  • Long. (^o): -123.886
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005176	Metagenome / Metatranscriptome	409	Y
F094927	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210306_11675191	F094927	N/A	MSFDFDPNLNIDREEVDNDPQDNDSLAGGEGLYGRVPGGPQVGAANRSQAHGGVGMARGGPVPRSAGQAPSPQGTLGRVPSHLSLAASAASASVLPTSGYFGSQKRQAVEINARRVIC
Ga0210306_11675192	F005176	N/A	VLRFPCIRPVATRGNDEGSCFVQDPPEQEDKSSPSSSMELKFELDTRLTVSCVVAVASAYGLLTVSIALDSIPLAFGNAVILLLILFVLFGWRELLGEFKKRAGN