Scaffold Ga0210306_1039609

Overview

Basic Information

• Taxon OID: 3300021312
• Scaffold ID: Ga0210306_1039609
• Source Dataset Name: Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1072 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3809
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Rhabditina → Rhabditomorpha → Rhabditoidea → Rhabditidae → Peloderinae → Caenorhabditis → Caenorhabditis brenneri (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.232
  • Long. (^o): -123.886
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041025	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210306_10396091	F041025	N/A	SKQSPGKGKDASKGPYPYSPSPRKAPDEKKISHNIKSLVNTNGTPYGWAFENFYNAKDFVKDLSNRNDAFIYFGGVEFKSFTNLTTRWVKSSLVGVNLWVMHIDESKVGTDGSFPMEAHIAYANKIARAVIHDNTFEGDKVDVVTLNLSELQVADLDSYYSTASFDEAREAIFQESIQEASAEMESLI