Scaffold Ga0206694_1091945

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0206694_1091945

Scaffold Ga0206694_1091945

Overview

Basic Information
Taxon OID	3300021291 Open in IMG/M
Scaffold ID	Ga0206694_1091945 Open in IMG/M
Source Dataset Name	Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	568
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.6907	Long. (^o)	-122.3448	Alt. (m)		Depth (m)	100
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F094753	Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206694_10919451	F094753	N/A	QDRANLRKHFPNNLSLLRRIMAKAMRAMRAAKAMKAMKRVSIIAKGKRARFVVFRGTKTKTLSGLTKSDLTKNSYGKIVSKKASAAGKKRYANTIKPWILAVQKARKALNLKGLVPVNGKSAQGKALYAKAKSFYSK

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