Scaffold Ga0210303_1054514

Overview

Basic Information

• Taxon OID: 3300021282
• Scaffold ID: Ga0210303_1054514
• Source Dataset Name: Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1035 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 555
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → unclassified Perkinsus → Perkinsus sp. BL_2016 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.195
  • Long. (^o): -123.822
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023359	Metagenome / Metatranscriptome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210303_10545141	F023359	N/A	EGIKTQVSIISDPTTLRQNIVESYTTFDSNAGGFVKGYFKTSQAFVVIVLVVSFVLTVLLTLFQLDRVRNWFIFSVGMSFTRIAITLLAALVLVSSVIAFLSFLGLPSGFKEEIPNCVDGPCREFSSSTKFADLQEKSGVNTYTLVNTRTWGPVEGWFIVLGIIPVSVVLLALIVLNKFPLPID