Scaffold Ga0223825_11973471

Overview

Basic Information

• Taxon OID: 3300021255
• Scaffold ID: Ga0223825_11973471
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8779
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location

• Location Name: New Zealand
• Coordinates
  • Lat. (^o): -42.26
  • Long. (^o): 171.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057035	Metagenome / Metatranscriptome	136	Y
F064301	Metagenome / Metatranscriptome	128	Y
F075545	Metagenome / Metatranscriptome	118	Y
F079361	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0223825_1197347112	F079361	AGTAG	MIYFTIAKNECGYLIDSISNDYDKLHNKFPDEKIYKSDEPIVSIYVLKDQLTVAQ
Ga0223825_1197347113	F064301	N/A	MQKSRKVVIPTKVSPIWQIGILFPDGKKISKPKCTLNDLFDTYFIGLDKYLNKNLSAEELLNKYKETFDKKGIKIQIRYIDSWGHTWKGKVAWPREYQFIEYLNKRIQND
Ga0223825_1197347114	F057035	N/A	MTEKEFLEKRIPIWLEGDDLHISTPSGMDKNNMHAMLTKKYGYNWIYSIRGYYWPGSHVQLYISDYECPNCTTLVTSYIFSYFPDIKYIGFGCNKGKPGEIWPPKIIIIRDMNMIKDDILNKQTEGTI
Ga0223825_119734718	F075545	GAG	MIQLVINTTLLREIDERKLINAYARFMYNDEKDTTDDLQIRENLIQLLDWDKNGDNGLGIYCSHFEKLKEKDWNRLIKFIKENHHEIKSISFYPAKERKLESIKVINSVIENKKKHNTERFTDSNYKVSGRGKKARPCIYEGREYKSRQECMYKEGLTKYQIWKYLKDTNQI