Scaffold Ga0206682_10054044

Overview

Basic Information

• Taxon OID: 3300021185
• Scaffold ID: Ga0206682_10054044
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2173
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052604	Metagenome / Metatranscriptome	142	Y
F079332	Metagenome	116	Y
F084724	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_100540441	F084724	N/A	MQLSNYEKNVILVALDHMEEHLETIELDGCITEDTYNLRMEAVSTARTKIQNN
Ga0206682_100540443	F052604	N/A	MITTKDQAIQFLTTMQQLYPFVHPEDDCKNIIDNEHSRVFNDDQVKYLNDSFNQCYTLLPDPCDTIITEIRPKMPMFNSKIK
Ga0206682_100540445	F079332	N/A	MNTIKQELSNNAGILAQQIAEVTIDQMYDTINNQLEYLNIDLDGDDYYEMLECITELTIKNIINLLNK