Scaffold Ga0206682_10039421

Overview

Basic Information

• Taxon OID: 3300021185
• Scaffold ID: Ga0206682_10039421
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2697
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → Candidatus Poseidoniaceae → Candidatus Poseidonia → unclassified Candidatus Poseidonia → Candidatus Poseidonia sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030388	Metagenome / Metatranscriptome	185	Y
F078668	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_100394213	F030388	N/A	MFNTNLIEFATGRVNGSYKPGADGSSVLTLPELLGAGAGGIGGNYGSQAGYDSLGAVLKTNLEKNWMNIAFGIVLIPVIAKTATKLIRKPVILPANRMLKSVGLDVKL
Ga0206682_100394214	F078668	GGA	MTTQATSITTGNPSMSKIFTLSATDDVWSGNVLTDSIANQSIGILIPGASLTFAQAEYEAGCMAWRLQNAQSLRVTSRGWGVKAGANCMSEAGISPITVSPNDILTVYPLPVDATAQKSNVLAWVTTTKGVELFKAKGVADNTATAMNTAVNGQGLGDAFFNSTLQAITIQCEDGCTLDSIQIIDEMGGVVFTAQGNVRGATTPAAKSNEYNLSIPRLAIRIGKGWSFKVITVSE