NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206682_10009042

Scaffold Ga0206682_10009042


Overview

Basic Information
Taxon OID3300021185 Open in IMG/M
Scaffold IDGa0206682_10009042 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7243
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004606Metagenome / Metatranscriptome431Y
F008190Metagenome / Metatranscriptome337Y
F029447Metagenome / Metatranscriptome188Y
F042621Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0206682_100090422F042621N/AMENTEEKKLQWIKGDKLGNVEIVKGVDNEWTIFNSGGRIATNLLSEFLEPLDGEPLDFNPPTPASTKAAKVYKEKLPPQKETSSPIRTLFDKQKKNDKVKLNLSFPINVPKKAIYEIISSSFDTEEVNDELESFIKNQISEDLILDSLFDSIKELIKTRYKID
Ga0206682_100090425F008190N/AMETEIEFNFIYSKDAIKVKKFLGSVPRNIECISYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQTVLGRNTTTSIFYVLGNLNKGTIIGVKKYVESLTDRAIYYNIYHSPDINVNGTAELFKDAVEFE
Ga0206682_100090426F004606GAGMKAHRIFTKGQTVYCLLSSFSRPNVLLPIKGLIVDTQWDPVNPLYQIRIIKMYDNMKYLKSNFFDMNFKYEFDNRARKMPIKKEDFKNKSLLEERFNESDRERFYVIVESVMCKKTKNDLQGLFEKVQFYIISKNLKEIRDISSRPFFKGSLSTDSSQEFNIRFKKGWSDKFKNGDIDIDKYLNSLS
Ga0206682_100090428F029447N/AMDIKSLTLKNKLIIDKTGEGYWDLTAPSFIYDSDLGVRALHYVMQDQIGRIDKISNIYFGSGEFIDAICVVNNIFNPFSVNEGDILIIPNLSRKDLVYKRPNPASRPNAVQEAYVDTGRQSEKDQSRIQRLIEKAKTKEAGVKQPMPPNMLQLGQESKTYEGGKIQLGTNLPSRNTKQSN

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