Scaffold Ga0206682

Basic Information
Taxon OID	3300021185 Open in IMG/M
Scaffold ID	Ga0206682_10009042 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021185 Open in IMG/M

Scaffold ID

Ga0206682_10009042 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7243
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7243

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (11.11%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.6907	Long. (^o)	-122.3448	Alt. (m)	Depth (m)	40
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.6907

Long. (^o)

-122.3448

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F029447	Metagenome / Metatranscriptome	188	Y
F042621	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_100090422	F042621	N/A	MENTEEKKLQWIKGDKLGNVEIVKGVDNEWTIFNSGGRIATNLLSEFLEPLDGEPLDFNPPTPASTKAAKVYKEKLPPQKETSSPIRTLFDKQKKNDKVKLNLSFPINVPKKAIYEIISSSFDTEEVNDELESFIKNQISEDLILDSLFDSIKELIKTRYKID
Ga0206682_100090425	F008190	N/A	METEIEFNFIYSKDAIKVKKFLGSVPRNIECISYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQTVLGRNTTTSIFYVLGNLNKGTIIGVKKYVESLTDRAIYYNIYHSPDINVNGTAELFKDAVEFE
Ga0206682_100090426	F004606	GAG	MKAHRIFTKGQTVYCLLSSFSRPNVLLPIKGLIVDTQWDPVNPLYQIRIIKMYDNMKYLKSNFFDMNFKYEFDNRARKMPIKKEDFKNKSLLEERFNESDRERFYVIVESVMCKKTKNDLQGLFEKVQFYIISKNLKEIRDISSRPFFKGSLSTDSSQEFNIRFKKGWSDKFKNGDIDIDKYLNSLS
Ga0206682_100090428	F029447	N/A	MDIKSLTLKNKLIIDKTGEGYWDLTAPSFIYDSDLGVRALHYVMQDQIGRIDKISNIYFGSGEFIDAICVVNNIFNPFSVNEGDILIIPNLSRKDLVYKRPNPASRPNAVQEAYVDTGRQSEKDQSRIQRLIEKAKTKEAGVKQPMPPNMLQLGQESKTYEGGKIQLGTNLPSRNTKQSN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206682_10009042

Overview

Ecosystem & Geography

Associated Families

Sequences