Scaffold Ga0206682_10000066

Overview

Basic Information

• Taxon OID: 3300021185
• Scaffold ID: Ga0206682_10000066
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 98237
• Total Scaffold Genes: 154
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 109 (70.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026436	Metagenome / Metatranscriptome	198	N
F044190	Metagenome / Metatranscriptome	155	N
F051048	Metagenome	144	N
F055006	Metagenome / Metatranscriptome	139	N
F079321	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_10000066152	F026436	AGG	LWLNIRMQKTEWIYESPDKGNTVYRRRANSRERELVIKKPHAHSISKNFTEIVAESANDPALKEMLDKLQVYWSLRNGAN
Ga0206682_10000066154	F044190	N/A	EWDIFVKGISAFTGDKWEWVDTVSQRWNAIARVKGLSESTEKEKIAFDWLSESRAYRTPRQLNGLKQSQLGEQLFEQLLALQILANSDPDYARRIAGDIMKLQNWPGFRTSQPDLYNVIAMIMKPEKFKDRIAQNVQITIPELRLKRNLRNIAKREFQNSDYSYMMLMLQRNMVDFLPAPLIQMRRQIANWERIVPRDKNVIRDRLMLQMRKSGLQNEFYEFLRRTKIFKRR
Ga0206682_1000006648	F051048	AGG	MKKAETVAFDSADIWAAAVYAQRINGGYNKEDLWSVDPDTHLVEEEPHTLANRTVARKVLAETPGLITVADRVKGTEVRKYISSKLMLKALTKKLSSFDESLSHAVALEEFIVPQDKMYIGIVNSQITAYEKMKKEEALLKDFVYGTYGKVGSRLDIKVIPTSSFWLTDWGTFRYNSITEDNYKTSFYYKEKLEIGVAVKVRGTVKSHTADTTTINRVKVLK
Ga0206682_1000006655	F055006	GGAG	MWKAVLVVCSIGSPDKCETWQDMMGPSQTYEACVERALEMNEDAFKHLQFYKGERAWKGRSYQCNKLPGGML
Ga0206682_1000006696	F079321	AGTAGG	VIGLGVQIMFKKLAILGVATALISCGTTNRALANDIFTQAPKIDYNQIFTETTIVMGVLNLLKEKPYVAPVNKTPKFYDHKQNDARLDNVINGFPHRAFNVTIARPTFPNRNRRTYMNIQFVVRWNQQYISELYNAVAASSNPGGKGFAKFINTKHWTTPGYDVQLDMTSSNKLMRGLYRAGPQLQVVVGNRSLGCFDLPELSGLTQGSRMAKNKMVQPNGNGTIINGWLEIQSHIELEITRADAHNIHNARIHVVNINQCR