NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210388_10079859

Scaffold Ga0210388_10079859


Overview

Basic Information
Taxon OID3300021181 Open in IMG/M
Scaffold IDGa0210388_10079859 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2774
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003015Metagenome / Metatranscriptome513Y
F008644Metagenome / Metatranscriptome330Y

Sequences

Protein IDFamilyRBSSequence
Ga0210388_100798592F003015AGGAGGMDRIKNLMAVAGFLLIGLGAVAQQSTTPPPGASNAPANVSTLRGCLRGQRGNYVLIDEKSNLPYVLKGVGNKLNGQLNRQVEVKGKILPGTIKTGINPDKAGSNPSDTARGVDGVPFQVANPETDVQTIAKKCKAADQQ
Ga0210388_100798594F008644N/AYADFILPNQIQTGLTRLPINVLLEFLDNLDAESHPLSTKGTVLTHLGSQNKEYGFDASVGQVKNKNDIQVGYAWYREEQDAAIASFIESDQRAPTNILQNRFYALWKLRSNTLASFTWWRGRALNTYLENNVALFNNYSSLPTISKAGEQEPYLNRVQFDLIYTF

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