Scaffold Ga0210388_10000010

Overview

Basic Information

• Taxon OID: 3300021181
• Scaffold ID: Ga0210388_10000010
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 378538
• Total Scaffold Genes: 352
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 262 (74.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013661	Metagenome / Metatranscriptome	269	Y
F013683	Metagenome / Metatranscriptome	269	Y
F092421	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210388_10000010110	F092421	AGCAG	VSAHTAPQADATQIQKDRAFEAQAKVFKSQILVEKGKIVDIRNRIADLKYQFDMWSTEYAQDPTDAQTCWTSAYYTPYYKDWCDTGRNLKAQYDASQRQLDQEKARLEQMQENIRRQGYGNGVYDPD
Ga0210388_1000001019	F013661	N/A	MSEILSIAIFEPLPESHAAALATMEELGAALAKGGYSRDSVYRDVKSGQYILLRYWRSEDARRAALEDSDVLRCWAKLAQEIRTVSVMETLEPVGA
Ga0210388_10000010321	F013683	AGGA	MEFIEYDFTRNPVVQNEHFFLESKCASCGFSILAGSVDELVEQEAAHRRQCRRLNSVA