NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10608572

Scaffold Ga0210396_10608572


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10608572 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)950
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002449Metagenome / Metatranscriptome558Y
F011892Metagenome / Metatranscriptome286Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_106085722F002449AGGAGVGRLIIAVVVGLAIAIGGSVLVVNVVSGHGNGTPSTSSTYNYGSR
Ga0210396_106085723F011892N/ACRSMYEARAEPALSSGNSLVISYNVNSEGVNTGCVPMAFYTNTVTLPRFVTVPLAAFGPAAQVRSVRSGPPDNPGIARRNPAQWFDSWGLRHGCPHIPAVTSVRASAGSGQVRLSWPDAGLGVRYLIYLNGPGQPGDRPVTTAYHDGATLTGLRPGSYVARVVPANFRKYTGRGAKVTFTVS

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