Scaffold Ga0210396

Basic Information
Taxon OID	3300021180 Open in IMG/M
Scaffold ID	Ga0210396_10000043 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	267604
Total Scaffold Genes	233 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	132 (56.65%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

267604

Total Scaffold Genes

233 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

132 (56.65%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000372	Metagenome / Metatranscriptome	1220	Y
F003216	Metagenome / Metatranscriptome	500	Y
F005085	Metagenome / Metatranscriptome	412	Y
F012097	Metagenome / Metatranscriptome	283	Y
F090674	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210396_10000043114	F003216	N/A	LQTASTALILPTMTLKTAALLALVGTTLITALLLWTFVFNLLNVLRDLVPPVALFSSFIEAFGCFTVALFFYVFHKSQ
Ga0210396_10000043159	F012097	AGGTGG	VNVVREVIVEDPTVAERETITPIGVRVERTALSPLALLHEEQIHALIQQLFFGREATPVRHVGFSTMETTSETAALCLEIASALAQENRYDVGLIDAQPEAVSLQTQLRIPSPNRAEATWPIAPRLWMVPRQSWLPGGGGARITDQNLTRLRELTTEFDFSILCCAAVSWITASIGQACDGLVLVLTANKTRRLVAAQIKDQLAKAQIPLLGTVLTERRFPVPQSLYRSL
Ga0210396_10000043163	F000372	GGAG	VSSAEPSTQFQSKIARRWTVIASGLLLLALALVVIYTAPNAFYSPVALVTVAAIGLAALLLQVWFRLDLPNIHSPLWLNVLGLGCALLSLFANNLRLTPRLLELVAFTAVICFGISGSLILRALRKRVPAPPSTATE
Ga0210396_10000043174	F005085	GGAGG	MDKHLDSRPDHEVSREEITSVMTALEPDQLIFAKEHHHCPRRKLTPVEMILFWALRIYLIFMVGVVVYQIWMGVR
Ga0210396_10000043226	F090674	AGGAG	MSEQELVFNIKELHVLSLTCGNCGHGTIFDFETQDYQEKLISPKCAVCNTELEVDLKEQLNAYRAFYESMSKCARIEFRVRLNKPEAAASASEVREAVSSAVAEVQEAVTTTFARELAGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210396_10000043

Overview

Ecosystem & Geography

Associated Families

Sequences