Scaffold Ga0210396_10000025

Overview

Basic Information

• Taxon OID: 3300021180
• Scaffold ID: Ga0210396_10000025
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 341017
• Total Scaffold Genes: 333
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 273 (81.98%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044088	Metagenome / Metatranscriptome	155	Y
F084543	Metagenome / Metatranscriptome	112	Y
F092494	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210396_10000025120	F084543	AGG	MELPKKLEKYTAKHIDEITDRIVALRVRWLRHVETELASQQSRPVLDHYKLNTEAAE
Ga0210396_10000025203	F044088	GGA	MSPGEAAASYRLYAVYCAEIAQTVTDSARRVALLDMAQAWAKLAEHVDKDCPSEEVSAAT
Ga0210396_10000025305	F092494	AGGA	MPARRKKSNDRPHTPKRLTPEQESAHRKAAFAAIRALFCQVTQPWKSCQRGYCRRHHCCIAEAGPGACLGRHWPLLTPAEQKAAHFDVIDGGPRRQRPQTRMEWSLRRFPPSNFVHG