Scaffold Ga0210408_10005153

Overview

Basic Information

• Taxon OID: 3300021178
• Scaffold ID: Ga0210408_10005153
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11506
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007663	Metagenome / Metatranscriptome	347	Y
F010184	Metagenome / Metatranscriptome	307	Y
F010267	Metagenome / Metatranscriptome	306	Y
F011251	Metagenome / Metatranscriptome	293	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210408_1000515310	F010267	AGGAGG	MAATPVTLSWHSIGRYMQIAGAGTFLVGGLLSLHHHAIGICFVAGAAAFYAGKKLQAT
Ga0210408_1000515313	F007663	N/A	MASNPNFVKKQIAVDTVSWTAIVAPIDCMAVSIKNSVLVDMRIRTDSADATTQDTISAGSIEIVSAARHTFGVQDGGSGSRFYAGDTIAFLQVASGTGPALLTFVR
Ga0210408_100051533	F011251	N/A	MNPYWIVVGFPSCLQLFFFLRWLHRRTRDDEIRRAFIRDMALNHLPHLYHALRQIAGHLGIELNEPPHVRFLEFNGNEGKE
Ga0210408_100051538	F010184	N/A	MWHTILTWLARHARGRYVLLLEEEVSRLRAENRALVNSLLGTAGFPPISPEDDARHGLVGLPPVRRRTWTQIAREREMAAGRGATEK