NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210408_10005153

Scaffold Ga0210408_10005153


Overview

Basic Information
Taxon OID3300021178 Open in IMG/M
Scaffold IDGa0210408_10005153 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11506
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007663Metagenome / Metatranscriptome347Y
F010184Metagenome / Metatranscriptome307Y
F010267Metagenome / Metatranscriptome306Y
F011251Metagenome / Metatranscriptome293Y

Sequences

Protein IDFamilyRBSSequence
Ga0210408_1000515310F010267AGGAGGMAATPVTLSWHSIGRYMQIAGAGTFLVGGLLSLHHHAIGICFVAGAAAFYAGKKLQAT
Ga0210408_1000515313F007663N/AMASNPNFVKKQIAVDTVSWTAIVAPIDCMAVSIKNSVLVDMRIRTDSADATTQDTISAGSIEIVSAARHTFGVQDGGSGSRFYAGDTIAFLQVASGTGPALLTFVR
Ga0210408_100051533F011251N/AMNPYWIVVGFPSCLQLFFFLRWLHRRTRDDEIRRAFIRDMALNHLPHLYHALRQIAGHLGIELNEPPHVRFLEFNGNEGKE
Ga0210408_100051538F010184N/AMWHTILTWLARHARGRYVLLLEEEVSRLRAENRALVNSLLGTAGFPPISPEDDARHGLVGLPPVRRRTWTQIAREREMAAGRGATEK

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