Basic Information | |
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Taxon OID | 3300021178 Open in IMG/M |
Scaffold ID | Ga0210408_10005153 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11506 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F007663 | Metagenome / Metatranscriptome | 347 | Y |
F010184 | Metagenome / Metatranscriptome | 307 | Y |
F010267 | Metagenome / Metatranscriptome | 306 | Y |
F011251 | Metagenome / Metatranscriptome | 293 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0210408_1000515310 | F010267 | AGGAGG | MAATPVTLSWHSIGRYMQIAGAGTFLVGGLLSLHHHAIGICFVAGAAAFYAGKKLQAT |
Ga0210408_1000515313 | F007663 | N/A | MASNPNFVKKQIAVDTVSWTAIVAPIDCMAVSIKNSVLVDMRIRTDSADATTQDTISAGSIEIVSAARHTFGVQDGGSGSRFYAGDTIAFLQVASGTGPALLTFVR |
Ga0210408_100051533 | F011251 | N/A | MNPYWIVVGFPSCLQLFFFLRWLHRRTRDDEIRRAFIRDMALNHLPHLYHALRQIAGHLGIELNEPPHVRFLEFNGNEGKE |
Ga0210408_100051538 | F010184 | N/A | MWHTILTWLARHARGRYVLLLEEEVSRLRAENRALVNSLLGTAGFPPISPEDDARHGLVGLPPVRRRTWTQIAREREMAAGRGATEK |
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