NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10097382

Scaffold Ga0210405_10097382


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10097382 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2321
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024594Metagenome / Metatranscriptome205Y
F046502Metagenome / Metatranscriptome151Y
F062067Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0210405_100973822F062067AGGAGMKKLLTTLAVLTAFATPAFAQYAPQDYQTAAPRSVQHKSAARQNGLHAFAMVPRAPAGSTLDDPSLTGGGSAGYNVLNRTY
Ga0210405_100973823F046502GGAMALKYLVRLATKTFVVLGVGMSLSTAAPAFSESPSYPWCAQGSIIRCWYMTRDQCEEAVNYHGFCVTDPNVPRRYGEKIRG
Ga0210405_100973824F024594AGGAGMSATKLAVAVALLLSATSAALAQGPQCYGDRPYYDFYGAGWLDSELHLGIDCNTAPPANAHPHGHSRHV
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