NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10005309

Scaffold Ga0210405_10005309


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10005309 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11825
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022957Metagenome / Metatranscriptome212Y
F043130Metagenome / Metatranscriptome157Y
F095834Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0210405_1000530917F022957AGGMVGSRRWQILALITMALVGVGFGIWLSRAGFTILGCFWIVVFLWRGQQFTVWFVAPVRAPSDVTPSFTSIWQRLLLSIMCLLGAAVCALGAYLWRVWPEEWQAGLVFILFGLLVLAPVAIKEIQFRRKALAHIQSPTTK
Ga0210405_100053093F043130N/AMLRLRLMFTVGVALCLIPVSCRQNVNLRDRIISADTSRYCLPDACFNRHVLAVENGYDVTTFLGAKPQHAHVPTKNLAKYLQSLPMQVWPRGPSIAISPTDDLTDQHPVEQNVLAAQEVCRSMGLQVQVLPGG
Ga0210405_100053099F095834GGAGGMVPKYDIFKKTDNSAVWVEAVEDIVAAKKRLISLSTTTPGEYKLWDSSRQEFINPMDECA
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