Scaffold Ga0210405_10002906

Overview

Basic Information

• Taxon OID: 3300021171
• Scaffold ID: Ga0210405_10002906
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17301
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001621	Metagenome / Metatranscriptome	662	Y
F032359	Metagenome / Metatranscriptome	180	Y
F105588	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210405_1000290611	F032359	AGGAG	MAWLIRKFHIPASESSMGILLTICIISMGLMSVALLWQAQIIANQREAIQWLETLKFGG
Ga0210405_1000290616	F105588	GGAGG	MIRLGAMIAAVTASLILWHECGEDIGVFCYRIGLGAFTTLRSRTLVPVPVPVRIILRTRAACSNRSDTSSTLFTTSKG
Ga0210405_1000290619	F001621	AGGAGG	MNSQVPKYVTQGRAALLLGISEAELCRLSHESGLGHKECAGEQEETFFTYEELRKICLLTVHQVN