Scaffold Ga0210405

Basic Information
Taxon OID	3300021171 Open in IMG/M
Scaffold ID	Ga0210405_10002892 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17385
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (89.47%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

17385

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (89.47%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F020887	Metagenome	221	Y
F025336	Metagenome	202	Y
F054526	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210405_1000289215	F020887	GGAGG	MRKRITLYGEIAGNIWMPAVECTKEFRLELIRIPSNSTTRTYPGIAPRSMEITSLRDALLHITNDGDFQSCSITWAVLEVSHYFGDEVAGSRTVKIRTRVWELRGQGQDTDCFAHPPVRNCFN
Ga0210405_1000289216	F054526	AGGA	MSNSQQEVNTPELIEQVIGSGLFSFVDESYFNRRGCEHCADRLAAEVYDLRGYRSLKDRELHEFQVCGDCIYRQYYGGN
Ga0210405_1000289217	F013913	AGGA	MNLTPSSKSSFFAGIGLWVLVWALLFKGDEIAKAGGLQRWVSSERCFRWIRNHKSTALIGTELCNYAHTGLDPLGVTFALGGTITNVLVIYVLLPMLERAKRSGTALNLHL
Ga0210405_1000289218	F025336	GGAGG	MVIALIAAAEAMLFSASGAKRNQARRQQILMGNGLESERCLPFVDEYLKRKTANANRVQVFVASKLAEICRRVVHTRSFEYLLLHVIRTATVKRHNKLLNTQGRITL
Ga0210405_1000289219	F014639	AGGAG	MSETTQFTRTSVSQETGFLRRKWRAILFFFDKHAFESNLEGILRATAGHEGNSLPAGDHQYELLNTEADLLSTELSNRWGLDVELLKARIAGLAKLKRLSAPPQTMSYSRLAWLGMLAIPVLCLLAGAAAGLVNLGFHLVGGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210405_10002892

Overview

Ecosystem & Geography

Associated Families

Sequences