Scaffold Ga0210405_10001797

Overview

Basic Information

• Taxon OID: 3300021171
• Scaffold ID: Ga0210405_10001797
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23462
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006277	Metagenome	377	Y
F029184	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210405_100017972	F029184	GAGG	MPKQPAYFDSQAAAAAALNIEIDDIREAKREGCPAFRSGRVYGKELVSWLETRALQNTGSAKLNGSGLEKGRSVIAQTIRGLSVCANLGLLTPEQYFDFCFTIVEAANDPELREVFRQTILNWLQLNFSEVAEAKARTAYPKIMSWFHSETKAQARRKDEEGDLEALLRRLNAQCGQLSS
Ga0210405_1000179728	F006277	N/A	MIDTDAGQKSGQIRLLYKTIAYVAAWIIALLLTAPSMWPLAYMFPLGLIAVFDRHLANDGGWGVLIGLYVVYIVHGFFYFRSKTTLRTAILFGVLVVLLTCNVAGCREMIHSH