Scaffold Ga0210405_10000023

Overview

Basic Information

• Taxon OID: 3300021171
• Scaffold ID: Ga0210405_10000023
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 195142
• Total Scaffold Genes: 162
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 130 (80.25%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002012	Metagenome / Metatranscriptome	604	Y
F002101	Metagenome / Metatranscriptome	593	Y
F003337	Metagenome / Metatranscriptome	493	Y
F004095	Metagenome / Metatranscriptome	453	Y
F083202	Metagenome	113	Y
F089293	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210405_1000002347	F003337	N/A	MSVSAIRNFVCWMMIVLCPLSLPAADTGSAVLHSEGGVWVNGLEVAASTVVFPGDLLETKPGFVANLDAEGSSVLIQPESVLKFQGTFLVLEHGSVSVGTSTSMSVHVDCIKVEPVSNERTQYEVANVSGTVQVAARKNDVNITQVGALQKASQESTPSQSATVHEGQQATRDEAAVCGAPLRPGGAASGLNTKWVEIGAGAGAGVLVLCLLLCKSKKNTNVSPAQP
Ga0210405_1000002348	F004095	AGGAG	MSGINGDKARFNRRRRQKISRRQSNEKMLKALAEKNLVAPAKPENLKEKTA
Ga0210405_1000002349	F002101	AGGAG	VTTPVLALPLSAPERIPAKKKRVLLLDTSQTKRDLRADVMRKLGIEVDCAADVLEARCWWRADLYNLVLINVAGEIDSRDKFCIDLRGATPPQRIAFFVGGPEYLAAAPHSDATPSEPDADALHRELVAALLAQNSGGSSQRWGILEACKKISSVRSVSEARSRALRETPRPSRWAEAIEQHSATATPQPLFATETAATKTEREELL
Ga0210405_1000002365	F083202	AGG	MPKTSHKKNSTMATAQPKRKTAMDTLLESMDELAVSAAKRMTTEEVRKVRKNINDLVDRAVERKPRRETA
Ga0210405_1000002366	F089293	N/A	MSKWTRTRRDPERTYCDPEETRKLRRDVQRVKELVAKGLEAEPEYVKLINELNPGMSPEQRKKLIRQFRDAVYAQQPDLPGR
Ga0210405_1000002387	F002012	AGG	MPLSATTWVISRFALTARVALSLYNLLRAQSVLVVGLVLLQGHASRRNDVYNILWAVVFGFATLNILSLAARRFEPNRRGLTFGELMAVLVVLLSVFLLGWELLSLVHIFPIKLHR