Scaffold Ga0210405_10000003

Overview

Basic Information

• Taxon OID: 3300021171
• Scaffold ID: Ga0210405_10000003
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 447901
• Total Scaffold Genes: 418
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 181 (43.30%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004361	Metagenome / Metatranscriptome	442	Y
F007433	Metagenome	351	Y
F022253	Metagenome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210405_1000000318	F022253	GAG	MRPFTLGVLLGLVLAVQAFAIIRPPYPAKPMPPYHGRFIVIGDDAKPGQVVVKPPK
Ga0210405_10000003261	F004361	AGGAGG	MKNYNSNNKLIILLFAAANLAVAAVVSAGGGYDYSRSELMGNSGLTIFREADFGNQIGLSISIDGTPITTLSRGEGYRAMVRPGRHILTVTDTPSPYGKTKFTEKAINLAPGQNYSFTAIWEVETIHLEDGGYVYHGFYR
Ga0210405_1000000377	F007433	GAG	MLKKNIETFTGKVVMVDGAYRFSLLKDPDTSLRLTRAHRESEFAAEQINLRKYYEKTISVNGTRQDEWIWSASVIGQWTPPGGDTGPNMNAPKPSRP