Scaffold Ga0210400_10554804

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10554804
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 948
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000739	Metagenome / Metatranscriptome	913	Y
F018044	Metagenome / Metatranscriptome	237	Y
F051385	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_105548041	F000739	GGAG	MMTRVEVWLKGLLAAAISGAAGGVLTGLAAVGIDPQHFNLQSGMGATFRIGVAAALINAVIGVAAYLQKSPLPEE
Ga0210400_105548042	F051385	GAGG	MFSKNWLRIASGVGLLIACVSVVAQSMVRNDWANQLYYGTTLIAVFGYLFLTSRSKEEERDSPWWW
Ga0210400_105548043	F018044	N/A	CFTLEDPRGEFVQLTPTVAEHIARAIERSRRHPRSAGKRALYDREQRRERSYDAYAYDILDDAVPAFHRQPFVSVG