NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10114328

Scaffold Ga0210400_10114328


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10114328 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2148
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053522Metagenome / Metatranscriptome141N
F062199Metagenome / Metatranscriptome131N
F079173Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_101143281F053522AGGAMTQVTQAATRSSRKTQATPHIRPIVADTSKPAPEADVAAHARPVPPIPQSAMQDAAFARNWWRVVIDAERTPYDRVLTDVTVWGPNEVKLRAGDLVEVLDEQSTLFALLYLVEHVPAKIIRFAELLKAPLGGVAIGRIESRGNHYAQWRGPAKRWCIIGPTGTVVRDGILSKEEAERDVTTR
Ga0210400_101143282F079173N/AMKIGEPIMHRYREFAVVSERDEVLRRAFRDGFKRAGLSFEQFLDALAWYRDHARPAADEAQLADAFTQYSSDRGWPAEQRDGVLDLYRAVRDNGPAAVMQAPRPDEDRAILARADELLRNNPARYWGDIELQDAAFEARERVSGHALSEGTARPAATVSPDRQRVGEIEALLRDPNGDGQRRYWTDSELRTDYAQALARLHGSIDSADGESAASSSAMLENFGMAPPTA
Ga0210400_101143283F062199GGAGMPAITQDNVLLWLHGRRLGLVGDGSFSVSSGLMVDSQLVGSKRGPVNSQLAPGNNGVGNVAFPAAVDGDVVLFALDLTTPANVTSSFETVISTAGQIRQTSATNLSTKNIFFQVAPAS
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