NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10000344

Scaffold Ga0210400_10000344


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10000344 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53859
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (54.90%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000780Metagenome / Metatranscriptome895Y
F021136Metagenome / Metatranscriptome220Y
F034119Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_1000034419F034119AGGAGMRSIRKFAYAAVLGMSMFTLLPALAAAGEAHGSFTLSHEVHWQKCVLSPGDYTFSLKTEGASEFLILRGVNGTATSAMMMVNDVEPSKPDEVGSMLTLVSRNGQSFVSTMALPEYDMTLHFAVPRENASREIASK
Ga0210400_1000034439F021136GGAGMVGIVAFHVVMLLVGLGIVSRILPSGRIGYMLGYLHKAIGITTPFPEQVRTVALIWIGSTIIVVDGCLLLLVFITSLSKSG
Ga0210400_1000034446F000780N/AMDRQIDSAKVNAGTKGETTKLETKTGAKQPSAYRSGHLMCRTPLWGVAGFLGCAYFAWVSFSRVTRGNYDWPHDFWTAATYIVWILLLAGLALDTRCLRERVFFGLLVINFLVGCGLTLWSNVPSAGVRTARIGTGALWAVAALASLTTLGSAAELRKKGAS

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